Motif View

Internal ID 18124149
Source Database TransTermHP TERM 8
Feature Type terminator
Name
Rho-independent transcription terminator TERM 8
Sequence GAGCTTTGAGGCTC
Look for more occurrences
Start 26434
End 26447
Strand -
Genomic Context
Replicon Pseudomonas chlororaphis strain EA105 contig_20, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACGCAGACAAAAAAA(5' tail) GAGCC(5' stem) TCAA(loop) AGCTC(3' stem) TTTGATGGGGAGGAA(3' tail). Confidence: 93. opp_overlap 26434, overlap 26437

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685