Motif View

Internal ID 18118647
Source Database TransTermHP TERM 2
Feature Type terminator
Name
Rho-independent transcription terminator TERM 2
Sequence CCCGCTTCGGCGGG
Look for more occurrences
Start 17390
End 17403
Strand -
Genomic Context
Replicon Pseudomonas sp. H1h Contig36, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGGGGCGTAAAAAAA(5' tail) CCCGC(5' stem) CGAA(loop) GCGGG(3' stem) TTTTTTGTCGAACCG(3' tail). Confidence: 100. opp_overlap 17390

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685