Motif View

Internal ID 18117994
Source Database TransTermHP TERM 98
Feature Type terminator
Name
Rho-independent transcription terminator TERM 98
Sequence GCCCCGCTCTTTTTATGAGATGCGGGGC
Look for more occurrences
Start 308569
End 308596
Strand +
Genomic Context
Replicon Pseudomonas sp. H1h Contig15, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACGCTGAATTCAAAA(5' tail) GCCCCGC-TCTT(5' stem) TTTAT(loop) GAGATGCGGGGC(3' stem) TTTTTTACGGCTATC(3' tail). Confidence: 100. gap 1, opp_overlap 308569

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685