Motif View

Internal ID 18117886
Source Database TransTermHP TERM 10
Feature Type terminator
Name
Rho-independent transcription terminator TERM 10
Sequence TGCCCCGCCGTTTTCACGGCGGGGCA
Look for more occurrences
Start 36443
End 36468
Strand +
Genomic Context
Replicon Pseudomonas sp. H1h Contig14, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGCGAGACAAAAAAA(5' tail) TGCCCCGCCGT(5' stem) TTTC(loop) ACGGCGGGGCA(3' stem) TTTTCATTGCGCTAA(3' tail). Confidence: 100. opp_overlap 36443

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685