Motif View

Internal ID 18117453
Source Database TransTermHP TERM 35
Feature Type terminator
Name
Rho-independent transcription terminator TERM 35
Sequence CGGCGCCATCAGGCGCCG
Look for more occurrences
Start 121698
End 121715
Strand +
Genomic Context
Replicon Pseudomonas sp. H1h Contig2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTACTGGTAGAAAAA(5' tail) CGGCGCC(5' stem) ATCA(loop) GGCGCCG(3' stem) TTTTCATTTATGCAG(3' tail). Confidence: 100. opp_overlap 121698, overlap 121693

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685