Motif View

Internal ID 18112566
Source Database TransTermHP TERM 19
Feature Type terminator
Name
Rho-independent transcription terminator TERM 19
Sequence GCCCGGCATTCGCCGGGC
Look for more occurrences
Start 99729
End 99746
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PS50 adkgi-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGAACCACGAAAAA(5' tail) GCCCGGC(5' stem) ATTC(loop) GCCGGGC(3' stem) TTTTTCGTTTTAATC(3' tail). Confidence: 100. opp_overlap 99722 99719 99729, overlap 99722

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685