Motif View

Internal ID 18111026
Source Database TransTermHP TERM 278
Feature Type terminator
Name
Rho-independent transcription terminator TERM 278
Sequence CCCGGCCCAGGCCGGG
Look for more occurrences
Start 1264692
End 1264707
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa Z61 adkgo-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCTCTAAGGAAAAA(5' tail) CCCGGC(5' stem) CCAG(loop) GCCGGG(3' stem) TTTTTCTTTGCCTGG(3' tail). Confidence: 100. opp_overlap 1264692, overlap 1264686

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685