Motif View

Internal ID 18109809
Source Database TransTermHP TERM 334
Feature Type terminator
Name
Rho-independent transcription terminator TERM 334
Sequence GCCTCGCGCGGGGC
Look for more occurrences
Start 1041309
End 1041322
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA047 adkfX-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCACCATGAATCCC(5' tail) GCCTC(5' stem) GCGC(loop) GGGGC(3' stem) TTTTTGTTTTATCCT(3' tail). Confidence: 93. opp_overlap 1041306 1041305, overlap 1041306 1041305

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685