Motif View

Internal ID 18109700
Source Database TransTermHP TERM 164
Feature Type terminator
Name
Rho-independent transcription terminator TERM 164
Sequence GCCCCGGCACTTGGCCGGGGC
Look for more occurrences
Start 454160
End 454180
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA047 adkfX-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCCCGTCCCAGGAAA(5' tail) GCCCCGGC(5' stem) CAAGT(loop) GCCGGGGC(3' stem) TTTTTCGTTCCCGTC(3' tail). Confidence: 95. opp_overlap 454160

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685