Motif View

Internal ID 18106931
Source Database TransTermHP TERM 313
Feature Type terminator
Name
Rho-independent transcription terminator TERM 313
Sequence CCCCGGCTCATGGCCGGGG
Look for more occurrences
Start 1220336
End 1220354
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA044 adkfY-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGATGGAACGAAGAA(5' tail) CCCCGGCC(5' stem) ATG(loop) AGCCGGGG(3' stem) TTCTTCGTTCCTGAT(3' tail). Confidence: 91. opp_overlap 1220336 1220333 1220329 1220325, overlap 1220333 1220329

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685