Motif View

Internal ID 18106707
Source Database TransTermHP TERM 172
Feature Type terminator
Name
Rho-independent transcription terminator TERM 172
Sequence GGCCGCTGATACCAGCGGCC
Look for more occurrences
Start 723807
End 723826
Strand -
Genomic Context Located within gene [Q050_RS0107945]
Replicon Pseudomonas aeruginosa BWHPSA045 adkfU-supercont1.4, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAACCCGAAAAAAAA(5' tail) GGCCGCTG(5' stem) GTAT(loop) CAGCGGCC(3' stem) TTGAGAAGACGTCGA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685