Motif View

Internal ID 18106570
Source Database TransTermHP TERM 456
Feature Type terminator
Name
Rho-independent transcription terminator TERM 456
Sequence CGCCGGCTATCGCCGGCG
Look for more occurrences
Start 1522807
End 1522824
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA045 adkfU-supercont1.3, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCTAGACGCAGGAA(5' tail) CGCCGGC(5' stem) TATC(loop) GCCGGCG(3' stem) TTCTTGTTTGCGCGT(3' tail). Confidence: 90. opp_overlap 1522807, overlap 1522804 1522801

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685