Motif View

Internal ID 18105617
Source Database TransTermHP TERM 7
Feature Type terminator
Name
Rho-independent transcription terminator TERM 7
Sequence GCGCCGGGCGGCGCCCGGCGC
Look for more occurrences
Start 19625
End 19645
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA043 adkgk-supercont1.8, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGTGGCGGGAAGAAA(5' tail) GCGCCGGGC(5' stem) GCC(loop) GCCCGGCGC(3' stem) CGTGGGTTCATTCCG(3' tail). Confidence: 100. opp_overlap 19623 19626 19628

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685