Motif View

Internal ID 18105497
Source Database TransTermHP TERM 22
Feature Type terminator
Name
Rho-independent transcription terminator TERM 22
Sequence GCCCCGCCCCGCGGGGC
Look for more occurrences
Start 103971
End 103987
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA043 adkgk-supercont1.6, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCCCTCCCTGAAGA(5' tail) GCCCCGC(5' stem) CCC(loop) GCGGGGC(3' stem) TTTTTCATCGCCAAC(3' tail). Confidence: 100. opp_overlap 103971

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685