Motif View

Internal ID 18103018
Source Database TransTermHP TERM 620
Feature Type terminator
Name
Rho-independent transcription terminator TERM 620
Sequence CGCCGGGCATCAGCCCGGCG
Look for more occurrences
Start 2659008
End 2659027
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA041 adkgd-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGGCGGAAACGAAAA(5' tail) CGCCGGGC(5' stem) TGAT(loop) GCCCGGCG(3' stem) TTTTTCATTGCGCGC(3' tail). Confidence: 100. opp_overlap 2659008, overlap 2659003

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685