Motif View

Internal ID 18102927
Source Database TransTermHP TERM 482
Feature Type terminator
Name
Rho-independent transcription terminator TERM 482
Sequence GCCGGCCTTCGGGCCGGC
Look for more occurrences
Start 1898912
End 1898929
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA041 adkgd-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGAACTGTACGAAT(5' tail) GCCGGCC(5' stem) TTCG(loop) GGCCGGC(3' stem) TTTTTTCTATCCGTT(3' tail). Confidence: 100. opp_overlap 1898912 1898911

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685