Motif View

Internal ID 18102014
Source Database TransTermHP TERM 624
Feature Type terminator
Name
Rho-independent transcription terminator TERM 624
Sequence CCCCGCCTCGGCGGGG
Look for more occurrences
Start 2515761
End 2515776
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWHPSA040 adkfQ-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGGCCAAAGAAAAA(5' tail) CCCCGC(5' stem) CGAG(loop) GCGGGG(3' stem) TTTTCGTGGAGCGGG(3' tail). Confidence: 100. opp_overlap 2515761

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685