Motif View

Internal ID 18096370
Source Database TransTermHP TERM 17
Feature Type terminator
Name
Rho-independent transcription terminator TERM 17
Sequence CGGACACTCCCAAGGGGTGTCCG
Look for more occurrences
Start 58996
End 59018
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWH036 adTyH-supercont1.25, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGTCGACGGCAGAGA(5' tail) CGGACACTCC(5' stem) CAA(loop) GGGGTGTCCG(3' stem) TTTTCATTTGCGCCG(3' tail). Confidence: 100. opp_overlap 58996

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685