Motif View

Internal ID 18095871
Source Database TransTermHP TERM 39
Feature Type terminator
Name
Rho-independent transcription terminator TERM 39
Sequence CCCGGCCTGGGCCGGG
Look for more occurrences
Start 119037
End 119052
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWH036 adTyH-supercont1.7, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCAGGCAAAGAAAAA(5' tail) CCCGGC(5' stem) CTGG(loop) GCCGGG(3' stem) TTTTTCCTTAGAGGC(3' tail). Confidence: 100. opp_overlap 119037 119031

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685