Motif View

Internal ID 18093552
Source Database TransTermHP TERM 120
Feature Type terminator
Name
Rho-independent transcription terminator TERM 120
Sequence CCGGTCCCTCGGGGCCGG
Look for more occurrences
Start 362325
End 362342
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWH032 adTys-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGGCATAAAAAAA(5' tail) CCGGCCC(5' stem) CGAG(loop) GGACCGG(3' stem) TTTTCAACAGGTCGT(3' tail). Confidence: 100. opp_overlap 362325, overlap 362283

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685