Motif View

Internal ID 18091213
Source Database TransTermHP TERM 3
Feature Type terminator
Name
Rho-independent transcription terminator TERM 3
Sequence GAAGCCCCGCCATAGCGGGGCTTC
Look for more occurrences
Start 6995
End 7018
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWH030 adTwj-supercont1.31, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTCGCGTGAAAACAA(5' tail) GAAGCCCCGC(5' stem) TATG(loop) GCGGGGCTTC(3' stem) TTTTATCGAATCGGC(3' tail). Confidence: 100. opp_overlap 6995, overlap 6998

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685