Motif View

Internal ID 18090425
Source Database TransTermHP TERM 138
Feature Type terminator
Name
Rho-independent transcription terminator TERM 138
Sequence CCGGCCTCTGAGCCGG
Look for more occurrences
Start 533740
End 533755
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWH030 adTwj-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAAACCCCCAAGAAA(5' tail) CCGGC(5' stem) CTCTGA(loop) GCCGG(3' stem) TTTTTTGTTGCCTAT(3' tail). Confidence: 100. opp_overlap 533740, overlap 533733

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685