Motif View

Internal ID 18089083
Source Database TransTermHP TERM 8
Feature Type terminator
Name
Rho-independent transcription terminator TERM 8
Sequence GCCCGGCATTCGCCGGGC
Look for more occurrences
Start 35940
End 35957
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa 3581 adTwT-supercont1.32, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGAACCACGAAAAA(5' tail) GCCCGGC(5' stem) ATTC(loop) GCCGGGC(3' stem) TTTTTCGTTTTAATC(3' tail). Confidence: 100. opp_overlap 35933 35930 35940, overlap 35933

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685