Motif View

Internal ID 18087525
Source Database TransTermHP TERM 80
Feature Type terminator
Name
Rho-independent transcription terminator TERM 80
Sequence GGCTCACCTCCGGGTGGGCC
Look for more occurrences
Start 322922
End 322941
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWH029 adTxJ-supercont1.4, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGAATACGACGAAAA(5' tail) GGCTCACC(5' stem) TCCG(loop) GGTGGGCC(3' stem) TTTTTGCTTTCCGCC(3' tail). Confidence: 100. opp_overlap 322916 322922, overlap 322916 322915

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685