Motif View

Internal ID 18084576
Source Database TransTermHP TERM 45
Feature Type terminator
Name
Rho-independent transcription terminator TERM 45
Sequence GGCCGCATCCGCGGCC
Look for more occurrences
Start 189982
End 189997
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa 3577 adTvG-supercont1.9, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCCCCGAAAAAAAA(5' tail) GGCCGC(5' stem) ATCC(loop) GCGGCC(3' stem) TTTTGCATTTTTCAT(3' tail). Confidence: 95. opp_overlap 189982, overlap 189977 189975

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685