Motif View

Internal ID 18082728
Source Database TransTermHP TERM 44
Feature Type terminator
Name
Rho-independent transcription terminator TERM 44
Sequence GCCCCGCGATTGCAGCTCCTGGTCGCGGGGC
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Start 153031
End 153061
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 3575 adTyh-supercont1.13, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGCGCATAAAAAA(5' tail) GCCCCGCGA-C-CAG(5' stem) GAG(loop) CTGCAATCGCGGGGC(3' stem) TGGAGTGGCCGATTT(3' tail). Confidence: 100. gap 2

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685