Motif View

Internal ID 18082652
Source Database TransTermHP TERM 34
Feature Type terminator
Name
Rho-independent transcription terminator TERM 34
Sequence GCCCCGCTTCGGCGGGGC
Look for more occurrences
Start 77722
End 77739
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 3575 adTyh-supercont1.11, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTGAGGAATAAAAAA(5' tail) GCCCCGC(5' stem) CGAA(loop) GCGGGGC(3' stem) TTTTCCAACCACAGG(3' tail). Confidence: 100. opp_overlap 77722, overlap 77715

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685