Motif View

Internal ID 18082537
Source Database TransTermHP TERM 6
Feature Type terminator
Name
Rho-independent transcription terminator TERM 6
Sequence GCCCCGCCATAGCGGGGC
Look for more occurrences
Start 6937
End 6954
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 3575 adTyh-supercont1.8, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGTGAAAACAAGAA(5' tail) GCCCCGC(5' stem) TATG(loop) GCGGGGC(3' stem) TTCTTTTATCGAATC(3' tail). Confidence: 93. opp_overlap 6934, overlap 6934

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685