Motif View

Internal ID 18076718
Source Database TransTermHP TERM 51
Feature Type terminator
Name
Rho-independent transcription terminator TERM 51
Sequence GAGGCTTCACGGAAACGGAAGCCTC
Look for more occurrences
Start 295291
End 295315
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWH059 adTvw-supercont1.3, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGGGCCTTTCTTTCA(5' tail) GAGGCTTCACG(5' stem) GAAA(loop) CG-GAAGCCTC(3' stem) TTTTTTCTGCCAGGG(3' tail). Confidence: 100. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685