Motif View

Internal ID 18074670
Source Database TransTermHP TERM 42
Feature Type terminator
Name
Rho-independent transcription terminator TERM 42
Sequence GGCCCGCGCGTCCGCGCGGGCC
Look for more occurrences
Start 301900
End 301921
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWH057 adTyM-supercont1.4, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAGCGATACCCCCGA(5' tail) GGCCCGCGC(5' stem) GTCC(loop) GCGCGGGCC(3' stem) TTTCTTTCAGAGGCT(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685