Motif View

Internal ID 18074233
Source Database TransTermHP TERM 44
Feature Type terminator
Name
Rho-independent transcription terminator TERM 44
Sequence GGCCGCATCCGCGGCC
Look for more occurrences
Start 218875
End 218890
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWH057 adTyM-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGCCCCAAAAAAAA(5' tail) GGCCGC(5' stem) ATCC(loop) GCGGCC(3' stem) TTTTGCATTTTTCAT(3' tail). Confidence: 100. opp_overlap 218875, overlap 218870 218868

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685