Motif View

Internal ID 18073846
Source Database TransTermHP TERM 24
Feature Type terminator
Name
Rho-independent transcription terminator TERM 24
Sequence GCCGGGCCGGGTTTTACCTACAGGTAAACCCGGCCCGGG
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Start 209709
End 209747
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWH056 adTwB-supercont1.8, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTTACCCCGGACATA(5' tail) CCCGGGCCGGG-TTTACC(5' stem) TGTA(loop) GGTAAAACCCGGCCCGGC(3' stem) CCTCGTTTGTCGACG(3' tail). Confidence: 95. gap 1, opp_overlap 209700 209707 209705, overlap 209737

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685