Motif View

Internal ID 18072187
Source Database TransTermHP TERM 609
Feature Type terminator
Name
Rho-independent transcription terminator TERM 609
Sequence GGCGCCCATGGGCGCC
Look for more occurrences
Start 2766080
End 2766095
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWH055 adTzt-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTCCATACGACGAAA(5' tail) GGCGCC(5' stem) CATG(loop) GGCGCC(3' stem) TTTTTCGTTTCCTCT(3' tail). Confidence: 100. opp_overlap 2766080, overlap 2766072

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685