Motif View

Internal ID 18071329
Source Database TransTermHP TERM 16
Feature Type terminator
Name
Rho-independent transcription terminator TERM 16
Sequence CCGGCCCAGTGGGGCCGG
Look for more occurrences
Start 59081
End 59098
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWH054 adTyv-supercont1.3, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGCTGGCTAAAGAA(5' tail) CCGGCCC(5' stem) CACT(loop) GGGCCGG(3' stem) TTTTGCGTTTCCCTC(3' tail). Confidence: 91. opp_overlap 59081

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685