Motif View

Internal ID 18070305
Source Database TransTermHP TERM 34
Feature Type terminator
Name
Rho-independent transcription terminator TERM 34
Sequence GCCCCGCTATCGCGGGGC
Look for more occurrences
Start 130416
End 130433
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWH053 adTyt-supercont1.3, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCCGGCAAGGAAAAA(5' tail) GCCCCGC(5' stem) TATC(loop) GCGGGGC(3' stem) TTTTTCGTGCAGGCC(3' tail). Confidence: 100. opp_overlap 130416

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685