Motif View

Internal ID 18067912
Source Database TransTermHP TERM 536
Feature Type terminator
Name
Rho-independent transcription terminator TERM 536
Sequence GCCGCCGGCCACAGGGCCGGCGGC
Look for more occurrences
Start 1846997
End 1847020
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWH051 adTzG-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCCCGAATGCTTCC(5' tail) GCCGCCGGCC(5' stem) ACAG(loop) GGCCGGCGGC(3' stem) TTCTCACTGACTAGA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685