Motif View

Internal ID 18066792
Source Database TransTermHP TERM 355
Feature Type terminator
Name
Rho-independent transcription terminator TERM 355
Sequence CCGGTCCCTCGGGGCCGG
Look for more occurrences
Start 1256679
End 1256696
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa BWH050 adTzs-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGGCATAAAAAAA(5' tail) CCGGCCC(5' stem) CGAG(loop) GGACCGG(3' stem) TTTTCAACAGGTCGT(3' tail). Confidence: 100. opp_overlap 1256679, overlap 1256637

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685