Motif View

Internal ID 18065707
Source Database TransTermHP TERM 299
Feature Type terminator
Name
Rho-independent transcription terminator TERM 299
Sequence GGGCGGCCTAGGCCGCCC
Look for more occurrences
Start 1217743
End 1217760
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa BWH049 adTyP-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATCCATCATGAAAAA(5' tail) GGGCGGC(5' stem) CTAG(loop) GCCGCCC(3' stem) TTTTTCGTTTTCCCC(3' tail). Confidence: 100. opp_overlap 1217743, overlap 1217737 1217736

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685