Motif View

Internal ID 18061240
Source Database TransTermHP TERM 25
Feature Type terminator
Name
Rho-independent transcription terminator TERM 25
Sequence CCCGCCACCGGTTCCCTGGTTTCCGGTCGGCGGG
Look for more occurrences
Start 73649
End 73682
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa strain JMM contig021, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACGGGCATAAAAAA(5' tail) CCCGCCGACCGG(5' stem) AAACCAGGGAA(loop) CCGGT-GGCGGG(3' stem) TGAAGACGGGATCGG(3' tail). Confidence: 100. gap 1

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685