Motif View

Internal ID 18048991
Source Database TransTermHP TERM 1374
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1374
Sequence GCCCCGCGTATGCGGGGC
Look for more occurrences
Start 6170772
End 6170789
Strand +
Genomic Context
Replicon Pseudomonas sp. Eur1 9.41 CD10DRAFT_unitig_0_quiver.2_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTTAAAGCAAAAAAA(5' tail) GCCCCGC(5' stem) GTAT(loop) GCGGGGC(3' stem) TATTTTTTAGTACAT(3' tail). Confidence: 100. opp_overlap 6170772, overlap 6170770

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685