Motif View

Internal ID 18048989
Source Database TransTermHP TERM 1372
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1372
Sequence AAGCCCCGCGTATGCGGGGCTA
Look for more occurrences
Start 6170770
End 6170791
Strand +
Genomic Context
Replicon Pseudomonas sp. Eur1 9.41 CD10DRAFT_unitig_0_quiver.2_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGTTAAAGCAAAAA(5' tail) AAGCCCCGC(5' stem) GTAT(loop) GCGGGGCTA(3' stem) TTTTTTAGTACATGT(3' tail). Confidence: 100. opp_overlap 6170772, overlap 6170772

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685