Motif View

Internal ID 18048101
Source Database TransTermHP TERM 131
Feature Type terminator
Name
Rho-independent transcription terminator TERM 131
Sequence GCCCCGACTGGTTCGGGGC
Look for more occurrences
Start 914390
End 914408
Strand +
Genomic Context
Replicon Pseudomonas sp. Eur1 9.41 CD10DRAFT_unitig_0_quiver.2_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GATCACATGAAAAAA(5' tail) GCCCCGA(5' stem) CTGGT(loop) TCGGGGC(3' stem) TTTTTTTGTGCTTTG(3' tail). Confidence: 100. opp_overlap 914390, overlap 914380 914379

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685