Motif View

Internal ID 18045300
Source Database TransTermHP TERM 10
Feature Type terminator
Name
Rho-independent transcription terminator TERM 10
Sequence CCCCATGATCACTCATGGGG
Look for more occurrences
Start 67713
End 67732
Strand -
Genomic Context
Replicon Pseudomonas sp. RIT357 contigs17, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGTAACGAAAAAA(5' tail) CCCCATGA(5' stem) GTGA(loop) TCATGGGG(3' stem) TTTTTCATTTCCAGC(3' tail). Confidence: 100. opp_overlap 67713

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685