Motif View

Internal ID 18041997
Source Database TransTermHP TERM 77
Feature Type terminator
Name
Rho-independent transcription terminator TERM 77
Sequence GGCCCTGCTTGTGCAGGGCC
Look for more occurrences
Start 255520
End 255539
Strand -
Genomic Context
Replicon Pseudomonas syringae strain UB0390 contig44.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAATACGTCTGAAAA(5' tail) GGCCCTGC(5' stem) ACAA(loop) GCAGGGCC(3' stem) TTTTGGTTATCGGTC(3' tail). Confidence: 100. opp_overlap 255515 255520

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685