Motif View

Internal ID 18037828
Source Database TransTermHP TERM 14
Feature Type terminator
Name
Rho-independent transcription terminator TERM 14
Sequence GGAAACCCCGGCCTGGCGCCGGGGTTTTC
Look for more occurrences
Start 42140
End 42168
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PA14 genomic scaffold acUKH-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TACCTGGCGCAAAAA(5' tail) GAAAACCCCGGC(5' stem) GCCAG(loop) GCCGGGGTTTCC(3' stem) ATGAGGGTCGGTCTG(3' tail). Confidence: 100. opp_overlap 42145, overlap 42145

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685