Motif View

Internal ID 17924978
Source Database TransTermHP TERM 92
Feature Type terminator
Name
Rho-independent transcription terminator TERM 92
Sequence GCCCCGGTCGTGATGATCGGGGC
Look for more occurrences
Start 323802
End 323824
Strand +
Genomic Context
Replicon Pseudomonas sp. GM41(2012) ctg7, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCCTGAAATGAAAAA(5' tail) GCCCCGGTCG(5' stem) TGA(loop) TGATCGGGGC(3' stem) TTTTGCGTTTGGAGG(3' tail). Confidence: 100. opp_overlap 323802 323796, overlap 323796 323795

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685