Motif View

Internal ID 17921034
Source Database TransTermHP TERM 636
Feature Type terminator
Name
Rho-independent transcription terminator TERM 636
Sequence TTTCGGCCAGGTCTCCTGGCCGAAA
Look for more occurrences
Start 1895133
End 1895157
Strand +
Genomic Context
Replicon Pseudomonas sp. HPB0071 genomic scaffold aczIi-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TAGTACGGTTAGCCT(5' tail) TTTCGGCCAGG(5' stem) TCT(loop) CCTGGCCGAAA(3' stem) TTGTTTTCGCAACAA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685