Motif View

Internal ID 17920166
Source Database TransTermHP TERM 941
Feature Type terminator
Name
Rho-independent transcription terminator TERM 941
Sequence GCCCCGCAGATGCGGGGC
Look for more occurrences
Start 4259819
End 4259836
Strand +
Genomic Context
Replicon Pseudomonas sp. P179 genomic scaffold acBRO-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACGTTGATCGTAGA(5' tail) GCCCCGC(5' stem) AGAT(loop) GCGGGGC(3' stem) TTTTTTATGCGAACC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685