Motif View

Internal ID 17916244
Source Database TransTermHP TERM 668
Feature Type terminator
Name
Rho-independent transcription terminator TERM 668
Sequence GCGCCCTGCCTCATGCAGGGCGC
Look for more occurrences
Start 3342368
End 3342390
Strand +
Genomic Context
Replicon Pseudomonas sp. VLB120, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGGCCTCTAATTCCA(5' tail) GCGCCCTGC(5' stem) CTCAT(loop) GCAGGGCGC(3' stem) TTTCATTTGCGCAAT(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685