Motif View

Internal ID 17914628
Source Database TransTermHP TERM 33
Feature Type terminator
Name
Rho-independent transcription terminator TERM 33
Sequence GCCCCGCTTATGCGGGGC
Look for more occurrences
Start 316662
End 316679
Strand +
Genomic Context
Replicon Pseudomonas sp. 2-92(2010) strain 2-92 scaffold5.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTGCACTAAGAAAGA(5' tail) GCCCCGC(5' stem) TTAT(loop) GCGGGGC(3' stem) TTTTTTAATTCCAGG(3' tail). Confidence: 100. opp_overlap 316660 316662

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685